| 51 | Clyde Fenton Primary School (Public) | Katherine | 416 |
| 52 | Manunda Terrace Primary School (Public) | Karama | 409 |
| 53 | Karama Primary School (Public) | Karama | 403 |
| 54 | Sadadeen Primary School (Public) | Alice Springs | 401 |
| 55 | Gillen Primary School (Public) | Alice Springs | 398 |
| 56 | Braitling Primary School (Public) | Alice Springs | 390 |
| 57 | Woolianna School (Public) | Daly River | 383 |
| 58 | Batchelor Area School (Public) | Batchelor | 381 |
| 59 | Mount Allan School (Public) | Yuelamu | 352 |
| 60 | Maningrida School (Public) | Maningrida | 346 |
| 61 | Timber Creek School (Public) | Timber Creek | 341 |
| 62 | Canteen Creek School (Public) | Canteen Creek | 337 |
| 62 | Tennant Creek Primary School (Public) | Tennant Creek | 337 |
| 64 | Murrupurtiyanuwu Catholic School (Private) | Bathurst Island | 317 |
| 65 | Elliott School (Public) | Elliott | 315 |
| 66 | Ngukurr School (Public) | Ngukurr | 314 |
| 67 | Wugularr School (Public) | Beswick | 312 |
| 68 | Ramingining School (Public) | Ramingining | 301 |
| 69 | Papunya School (Public) | Papunya | 277 |
| 70 | Gapuwiyak School (Public) | Gapuwiyak | 262 |
| 71 | Angurugu School (Public) | Angurugu | 261 |
| 72 | Yipirinya School (Private) | Alice Springs | 258 |
| 73 | Yuendumu School (Public) | Yuendumu | 248 |
| 74 | Umbakumba School (Public) | Umbakumba | 232 |
| 75 | Shepherdson College (Public) | Galiwinku | 231 |
| 76 | Yirrkala School (Public) | Yirrkala | 230 |
| 77 | Milingimbi School (Public) | Milingimbi | 229 |
| 78 | Yirrkala Homeland School (Public) | Yirrkala | 213 |
