| 1 | The Essington School Darwin (Private) | Nightcliff | 575 |
| 2 | Nhulunbuy Christian School (Private) | Nhulunbuy | 568 |
| 3 | St Philip's College (Private) | Alice Springs | 548 |
| 4 | Darwin Middle School (Public) | The Gardens | 539 |
| 5 | Palmerston Christian School (Private) | Marlow Lagoon | 537 |
| 6 | Marrara Christian School (Private) | Marrara | 533 |
| 7 | Kormilda College (Private) | Berrimah | 526 |
| 7 | O'Loughlin Catholic College (Private) | Sanderson | 526 |
| 9 | Dripstone Middle School (Public) | Tiwi | 519 |
| 10 | Good Shepherd Lutheran College (Private) | Palmerston | 518 |
| 11 | Our Lady of the Sacred Heart College (Private) | Alice Springs | 516 |
| 12 | Katherine School Of The Air (Public) | Katherine | 507 |
| 13 | Nhulunbuy High School (Public) | Nhulunbuy | 501 |
| 14 | Araluen Christian College (Private) | Alice Springs | 499 |
| 15 | St John's College (Private) | Stuart Park | 493 |
| 16 | Nightcliff Middle School (Public) | Rapid Creek | 491 |
| 17 | St Joseph's College (Private) | Katherine | 485 |
| 17 | Taminmin College (Public) | Humpty Doo | 485 |
| 19 | Sanderson Middle School (Public) | Malak | 475 |
| 20 | Batchelor Area School (Public) | Batchelor | 452 |
| 21 | Centralian Middle School (Public) | Alice Springs | 446 |
| 22 | Canteen Creek School (Public) | Canteen Creek | 428 |
| 23 | Jabiru Area School (Public) | Jabiru | 425 |
| 24 | Woolianna School (Public) | Daly River | 423 |
| 25 | Timber Creek School (Public) | Timber Creek | 398 |
| 26 | Tennant Creek High School (Public) | Tennant Creek | 369 |
| 27 | Wugularr School (Public) | Beswick | 364 |
| 27 | Nyangatjatjara College (Private) | Yulara | 364 |
| 29 | Ngukurr School (Public) | Ngukurr | 354 |
| 30 | Xavier Community Education Centre (Private) | Bathurst Island | 349 |
| 31 | Maningrida School (Public) | Maningrida | 332 |
| 32 | Gapuwiyak School (Public) | Gapuwiyak | 329 |
| 33 | Yirara College (Private) | Alice Springs | 328 |
| 34 | Angurugu School (Public) | Angurugu | 320 |
| 35 | Umbakumba School (Public) | Umbakumba | 319 |
| 35 | Shepherdson College (Public) | Galiwinku | 319 |
| 37 | Woolaning Homeland Christian College (Private) | Woolaning | 316 |
| 38 | Milingimbi School (Public) | Milingimbi | 301 |
| 39 | Papunya School (Public) | Papunya | 288 |
| 40 | Yirrkala School (Public) | Yirrkala | 279 |
| 41 | Yirrkala Homeland School (Public) | Yirrkala | 254 |
