| 1 | The Essington School Darwin (Private) | Nightcliff | 515 |
| 2 | The Alice Springs Steiner School (Private) | Alice Springs | 501 |
| 3 | Araluen Christian College (Private) | Alice Springs | 500 |
| 5 | Living Waters Lutheran Primary School (Private) | Alice Springs | 495 |
| 6 | Milkwood Steiner School (Private) | Berrimah | 490 |
| 9 | Nhulunbuy Christian School (Private) | Nhulunbuy | 485 |
| 10 | Our Lady of the Sacred Heart College (Private) | Alice Springs | 478 |
| 13 | Holy Spirit Primary School (Private) | Wanguri | 477 |
| 14 | St Francis of Assisi School (Private) | Humpty Doo | 476 |
| 18 | St Mary's Primary School (Private) | Darwin | 470 |
| 18 | St Paul's Primary School (Private) | Nightcliff | 470 |
| 21 | Holy Family Primary School (Private) | Karama | 466 |
| 22 | Marrara Christian School (Private) | Marrara | 462 |
| 28 | Sacred Heart School (Private) | Palmerston | 455 |
| 29 | Good Shepherd Lutheran College (Private) | Palmerston | 453 |
| 37 | St Andrew Lutheran School (Private) | Leanyer | 443 |
| 42 | Palmerston Christian School (Private) | Marlow Lagoon | 434 |
| 46 | St Joseph's College (Private) | Katherine | 424 |
| 64 | Murrupurtiyanuwu Catholic School (Private) | Bathurst Island | 317 |
| 72 | Yipirinya School (Private) | Alice Springs | 258 |
